Local time:
| Time | Flight | Route | Airline | Aircraft | Status |
|---|---|---|---|---|---|
| Saturday, 4 April | |||||
| 08:45 | JL3722 | Kagoshima (Kagoshima Airport) | Japan Airlines | E70 | Scheduled |
| 09:55 | JC3831 | Kikaiga Shima (Kikaiga Shima) | Japan Air Commuter | AT46 (ATR 42-600) | Scheduled |
| 10:15 | JL3724 | Kagoshima (Kagoshima Airport) | Japan Airlines | E70 | Scheduled |
| 10:25 | JC3841 | Tokunoshima (Tokunoshima) | JAL Express | AT4 | Scheduled |
| 11:45 | JC3833 | Kikaiga Shima (Kikaiga Shima) | Japan Air Commuter | AT46 (ATR 42-600) | Scheduled |
| 11:50 | BC382 | Kagoshima (Kagoshima Airport) | Skymark Airlines | 737 | Scheduled |
| 11:50 | JL3726 | Kagoshima (Kagoshima Airport) | Japan Airlines | E70 | Scheduled |
| 12:10 | JL2464 | Osaka (Itami Airport) | Japan Airlines | 73H | Scheduled |
| 13:30 | RAC854 | Okinawa (Naha Airport) | Ryukyu Air Commuter | DH4 | Scheduled |
| 13:40 | JC3861 | Yoronjima (Yoron Airport) | Japan Air Commuter | AT46 (ATR 42-600) | Scheduled |
| 13:50 | MM542 | Tokyo (Narita International Airport) | Peach | 320 | Estimated dep 13:50 |
| 14:35 | JL3730 | Kagoshima (Kagoshima Airport) | Japan Airlines | E70 | Scheduled |
| 15:05 | JL658 | Tokyo (Haneda Airport) | Japan Airlines | 737 | Scheduled |
| 15:25 | MM206 | Osaka (Kansai International Airport) | Peach | 320 | Estimated dep 15:25 |
| 16:00 | JC3835 | Kikaiga Shima (Kikaiga Shima) | Japan Air Commuter | AT46 (ATR 42-600) | Scheduled |
| 17:40 | JC3736 | Kagoshima (Kagoshima Airport) | Japan Air Commuter | AT46 (ATR 42-600) | Scheduled |
| 18:00 | JC3843 | Tokunoshima (Tokunoshima) | JAL Express | AT4 | Scheduled |
| 18:35 | JL3684 | Fukuoka (Fukuoka Airport) | Japan Airlines | E70 | Scheduled |
| 18:55 | BC388 | Kagoshima (Kagoshima Airport) | Skymark Airlines | 737 | Scheduled |
| Sunday, 5 April | |||||
| 08:45 | JL3722 | Kagoshima (Kagoshima Airport) | Japan Airlines | E70 | Scheduled |
| 09:55 | JC3831 | Kikaiga Shima (Kikaiga Shima) | JAL Express | AT4 | Scheduled |
| 10:15 | JL3724 | Kagoshima (Kagoshima Airport) | Japan Airlines | E70 | Scheduled |
| 10:25 | JC3841 | Tokunoshima (Tokunoshima) | JAL Express | AT4 | Scheduled |
| 11:45 | JC3833 | Kikaiga Shima (Kikaiga Shima) | JAL Express | AT4 | Scheduled |
| 11:50 | BC382 | Kagoshima (Kagoshima Airport) | Skymark Airlines | 738 | Scheduled |
| 11:50 | JL3726 | Kagoshima (Kagoshima Airport) | Japan Airlines | E70 | Scheduled |
| 12:10 | JL2464 | Osaka (Itami Airport) | Japan Airlines | 73H | Scheduled |
| 13:30 | RAC854 | Okinawa (Naha Airport) | Ryukyu Air Commuter | DH4 | Scheduled |
| 13:40 | JC3861 | Yoronjima (Yoron Airport) | JAL Express | AT4 | Scheduled |
| 13:50 | MM542 | Tokyo (Narita International Airport) | Peach | 320 | Scheduled |
| 14:35 | JL3730 | Kagoshima (Kagoshima Airport) | Japan Airlines | E70 | Scheduled |
| 15:05 | JL658 | Tokyo (Haneda Airport) | Japan Airlines | 737 | Scheduled |
| 15:25 | MM206 | Osaka (Kansai International Airport) | Peach | 320 | Scheduled |
| 16:00 | JC3835 | Kikaiga Shima (Kikaiga Shima) | JAL Express | AT4 | Scheduled |
| 17:40 | JC3736 | Kagoshima (Kagoshima Airport) | JAL Express | AT4 | Scheduled |