Local time:
| Time | Flight | Route | Airline | Aircraft | Status |
|---|---|---|---|---|---|
| Thursday, 20 June | |||||
| 08:20 | JL3681 | Fukuoka (Fukuoka Airport) | Japan Airlines | E70 | Scheduled |
| 08:35 | JC3721 | Kagoshima (Kagoshima Airport) | Japan Air Commuter | AT46 (ATR 42-600) | Scheduled |
| 09:15 | JC3723 | Kagoshima (Kagoshima Airport) | JAL Express | AT4 | Scheduled |
| 09:45 | JL3725 | Kagoshima (Kagoshima Airport) | Japan Airlines | E70 | Scheduled |
| 10:55 | JC3830 | Kikaiga Shima (Kikaiga Shima) | JAL Express | AT6 | Scheduled |
| 11:05 | JL2465 | Osaka (Itami Airport) | Japan Airlines | 73H | Scheduled |
| 11:05 | JL3727 | Kagoshima (Kagoshima Airport) | Japan Airlines | E70 | Scheduled |
| 11:10 | BC381 | Kagoshima (Kagoshima Airport) | Skymark Airlines | 737 | Scheduled |
| 13:15 | JC3862 | Yoronjima (Yoron Airport) | JAL Express | AT6 | Scheduled |
| 13:25 | JW823 | Tokyo (Narita International Airport) | Vanilla Air | 320 | Scheduled |
| 13:55 | RAC853 | Okinawa (Naha Airport) | Ryukyu Air Commuter | DH4 | Scheduled |
| 14:20 | JL659 | Tokyo (Haneda Airport) | Japan Airlines | 737 | Scheduled |
| 15:25 | JC3842 | Tokunoshima (Tokunoshima) | Japan Air Commuter | AT46 (ATR 42-600) | Scheduled |
| 15:35 | JL3733 | Kagoshima (Kagoshima Airport) | Japan Airlines | E70 | Scheduled |
| 15:40 | JC3832 | Kikaiga Shima (Kikaiga Shima) | JAL Express | AT4 | Scheduled |
| 17:20 | JC3834 | Kikaiga Shima (Kikaiga Shima) | JAL Express | AT4 | Scheduled |
| 17:25 | JC3844 | Tokunoshima (Tokunoshima) | Japan Air Commuter | AT46 (ATR 42-600) | Scheduled |
| 18:00 | JL3735 | Kagoshima (Kagoshima Airport) | Japan Airlines | E70 | Scheduled |
| 18:15 | BC387 | Kagoshima (Kagoshima Airport) | Skymark Airlines | 737 | Scheduled |
| 18:30 | JL3737 | Kagoshima (Kagoshima Airport) | Japan Airlines | E70 | Scheduled |